Griff - your milestones are on the milestone tab. Do you see the different tabs running along the top?
Don't use Project-gc as it doesn't give the same stats as GSAK which is odd because it looks great otherwise.
YOSM duplicates - I have just one so keep this as a count, as they are in different locations like any virtual.
Lab caches - GS still don't know how to deal with these, so until they are FULLY included in your profile, i.e. are in your My Finds PQ, which they aren't at the moment, I don't count them on my stats.